Data sets in FLJ human cDNA database

(FLJ human cDNA database ver. 3.0)

Human cDNA sequences used for annotation analysis of Pfam, SOSUI, homology search etc.

1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,326

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 17,697

    (ORF regions and 5'-noncoding regions)

    ii) FLJ cDNA full ORF sequencing project II type A by FAP-PJ : 1,582

    (ORF regions only)

    iii) FLJ cDNA full ORF sequencing project II type B by FAP-PJ : 598

    (not including 5'-noncoding region)

    iv) Draft grade sequences of FLJ cDNA full ORF sequencing project I by SV-PJ : 2,622

    2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA: 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 25,778

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 15,677

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    Human cDNA and genome sequences used for genome mapping

    1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,326

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 17,697

    (ORF regions and 5'-noncoding regions)

    ii) FLJ cDNA full ORF sequencing project II type A by FAP-PJ : 3,462

    (ORF regions only)

    iii) FLJ cDNA full ORF sequencing project II type B by FAP-PJ : 603

    (not including 5'-noncoding region)

    iv) Draft grade sequences of FLJ cDNA full ORF sequencing project I by SV-PJ : 3,282

  • FLJ ESTs : 5'-EST 1,456,213 & 3'-EST 109,283

    • 2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA : 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 25,778

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 15,677

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    c) XM : 5,239

    d) XR : 61

  • Ensembl, human gene transcripts, human-38.36g/UCSC hg18 : 47,585
  • UniGene, human ESTs* : 5'-EST 2,699,311 & 3'-EST 1,638,884

    • * not including deposited about 1.6 million of FLJ EST sequences

    3) Human genome sequences

  • UCSC hg18 (NCBI Build 36.1)